java.lang.Object
- pal.treesearch.AbstractParentableConstrainedNode
- - pal.treesearch.ConstrainedInternalNode

All Implemented Interfaces:: ConstrainedNode, GeneralOptimisable, GeneralTreeComponent, ParentableConstrainedNode

public class ConstrainedInternalNode
extends AbstractParentableConstrainedNode
implements ConstrainedNode, GeneralOptimisable

Nested Class Summary
- Nested classes/interfaces inherited from interface pal.treesearch.ConstrainedNode
  ConstrainedNode.HeightAdjustment

Constructor Summary

Constructors
Constructor	Description
`ConstrainedInternalNode(Node peer, ParentableConstrainedNode parentNode, GeneralConstructionTool tool, GeneralConstraintGroupManager.Store store, GeneralConstraintGroupManager groupManager)`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`double`	`calculateLogLikelihood(GeneralConstructionTool tool)`
`ConditionalProbabilityStore`	`getAscendentExtended(double baseHeight, ConstrainedNode childCaller, GeneralConstructionTool tool, boolean allowCaching)`
`ConditionalProbabilityStore`	`getAscendentFlat(ConstrainedNode childCaller, GeneralConstructionTool tool, boolean allowCaching)`
`PatternInfo`	`getAscendentPatternInfo(ConstrainedNode childCaller, GeneralConstructionTool tool)`
`PatternInfo`	`getCenterPattern(GeneralConstructionTool tool)`	For center pattern, left is ascendent component, right is descendent component
`void`	`getNonSubTreeComponents(java.util.ArrayList store, java.lang.Class componentType)`
`int`	`getNumberOfOptimisationTypes()`
`double`	`optimise(int optimisationType, UnivariateMinimum minimiser, GeneralConstructionTool tool, int fracDigits)`
`void`	`recursivelySetParentPivot(PivotNode parentPivot)`
`void`	`testLikelihood(GeneralConstructionTool tool)`

Methods inherited from class pal.treesearch.AbstractParentableConstrainedNode
adjustNodeHeight, buildDescendentPALNodeBase, buildDescendentPALNodeES, buildLeftDecendentPALNodeBase, buildRightDecendentPALNodeBase, getAllComponents, getConstrainedInternal, getDescendentExtendedConditionals, getDescendentExtendedConditionalsWithAdjustedInternalHeights, getDescendentFlatConditionals, getDescendentLogLikelihood, getDescendentPatternInfo, getLeftChild, getLeftChildPatternInfo, getLeftDescendentExtendedConditionals, getLeftDescendentExtendedConditionals, getMaxChildHeight, getMaxOriginalDescendentLeafHeight, getMinimumChildSeperation, getMinimumChildSeperation, getMinimumDirectChildDistance, getMinimumLeafChildSeperation, getMinimumLeafChildSeperation, getMinOriginalDescendentLeafHeight, getNodeHeight, getNonSubTreeOfChildComponents, getRightChild, getRightChildPatternInfo, getRightDescendentExtendedConditionals, getRightDescendentExtendedConditionals, getSubTreeComponents, isLeftChild, obtainConstrainedExternalCalculator, obtainLeafInformation, rebuildDescendentPattern, recursivelyAdjustNodeHeight, recursivelySetChildrenParentPivot, setNodeHeight, setupInternalNodeHeights, toStringHeights, toStringLengths, toStringLengths

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface pal.treesearch.GeneralTreeComponent
getAllComponents

Constructor Detail

ConstrainedInternalNode

public ConstrainedInternalNode(Node peer,
                               ParentableConstrainedNode parentNode,
                               GeneralConstructionTool tool,
                               GeneralConstraintGroupManager.Store store,
                               GeneralConstraintGroupManager groupManager)

Method Detail

recursivelySetParentPivot
```
public void recursivelySetParentPivot(PivotNode parentPivot)
```
Specified by:

recursivelySetParentPivot in interface ConstrainedNode

getNonSubTreeComponents
```
public void getNonSubTreeComponents(java.util.ArrayList store,
                                    java.lang.Class componentType)
```
Specified by:

getNonSubTreeComponents in interface ConstrainedNode

Specified by:

getNonSubTreeComponents in class AbstractParentableConstrainedNode

calculateLogLikelihood

public double calculateLogLikelihood(GeneralConstructionTool tool)

getCenterPattern
```
public PatternInfo getCenterPattern(GeneralConstructionTool tool)
```
For center pattern, left is ascendent component, right is descendent component

Parameters:

tool - The consturction tool

Returns:

Pattern info

getAscendentExtended

public ConditionalProbabilityStore getAscendentExtended(double baseHeight,
                                                        ConstrainedNode childCaller,
                                                        GeneralConstructionTool tool,
                                                        boolean allowCaching)

Specified by:: getAscendentExtended in interface ParentableConstrainedNode

getAscendentFlat

public ConditionalProbabilityStore getAscendentFlat(ConstrainedNode childCaller,
                                                    GeneralConstructionTool tool,
                                                    boolean allowCaching)

Specified by:: getAscendentFlat in interface ParentableConstrainedNode

testLikelihood
```
public void testLikelihood(GeneralConstructionTool tool)
```
Specified by:

testLikelihood in interface ConstrainedNode

getAscendentPatternInfo

public PatternInfo getAscendentPatternInfo(ConstrainedNode childCaller,
                                           GeneralConstructionTool tool)

Specified by:: getAscendentPatternInfo in interface ParentableConstrainedNode

getNumberOfOptimisationTypes
```
public int getNumberOfOptimisationTypes()
```
Specified by:

getNumberOfOptimisationTypes in interface GeneralOptimisable

optimise

public double optimise(int optimisationType,
                       UnivariateMinimum minimiser,
                       GeneralConstructionTool tool,
                       int fracDigits)

Specified by:: optimise in interface GeneralOptimisable
Parameters:: minimiser - The single dimensional minimisation tool; tool - The construction tool; fracDigits - the number of fractional digits to converge to
Returns:: The optimised log likelihood

Class ConstrainedInternalNode

Nested Class Summary

Nested classes/interfaces inherited from interface pal.treesearch.ConstrainedNode

Constructor Summary

Method Summary

Methods inherited from class pal.treesearch.AbstractParentableConstrainedNode

Methods inherited from class java.lang.Object

Methods inherited from interface pal.treesearch.ConstrainedNode

Methods inherited from interface pal.treesearch.GeneralTreeComponent

Constructor Detail

ConstrainedInternalNode

Method Detail

recursivelySetParentPivot

getNonSubTreeComponents

calculateLogLikelihood

getCenterPattern

getAscendentExtended

getAscendentFlat

testLikelihood

getAscendentPatternInfo

getNumberOfOptimisationTypes

optimise