Uses of Interface
pal.tree.TreeGenerator
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Packages that use TreeGenerator Package Description pal.tree Classes for providing the data structure of trees, for constructing and modifying trees, and for parameterizing trees (e.g., clock constraint). -
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Uses of TreeGenerator in pal.tree
Subinterfaces of TreeGenerator in pal.tree Modifier and Type Interface Description interfaceTreeIteratorMethods in pal.tree that return TreeGenerator Modifier and Type Method Description static TreeGeneratorTreeGenerator.Utils. createNeighbourJoiningGenerator(DistanceMatrixGenerator dataGenerator, java.lang.String[] outgroupNames)Methods in pal.tree with parameters of type TreeGenerator Modifier and Type Method Description static TreeTreeUtils. getReplicateCladeSupport(java.lang.String attributeName, Tree baseTree, TreeGenerator treeGenerator, int numberOfReplicates, AlgorithmCallback callback)Generates a tree which is identical to baseTree but has attributes (defined by attributeName) at all internal nodes excluding the root node signifying (as a value between 0 and 100) the replicate support by clade (that is the proportion of replicates that produce the sub clade under that node)
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