Uses of Class pal.tree.ParameterizedTree.ParameterizedTreeBase

Packages that use ParameterizedTree.ParameterizedTreeBase
Package	Description
pal.coalescent	Classes to model population genetic processes using the coalescent.
pal.tree	Classes for providing the data structure of trees, for constructing and modifying trees, and for parameterizing trees (e.g., clock constraint).

Uses of ParameterizedTree.ParameterizedTreeBase in pal.coalescent

Subclasses of ParameterizedTree.ParameterizedTreeBase in pal.coalescent
Modifier and Type	Class	Description
`class`	`DemographicClockTree`	Provides parameter interface to a clock-like genealogy which is assumed to have some demographic pattern of theta (diversity) as well as branch parameters (the minimal node height differences at each internal node).

Uses of ParameterizedTree.ParameterizedTreeBase in pal.tree

Subclasses of ParameterizedTree.ParameterizedTreeBase in pal.tree
Modifier and Type	Class	Description
`class`	`ClockTree`	provides parameter interface to a clock tree (parameters are the minimal node height differences at each internal node)
`class`	`LogParameterizedTree`	This class logarithmically transforms tree parameters.
`class`	`MutationRateModelTree`	Provides parameter interface to any clock-like tree with serially sampled tips (parameters are the minimal node height differences at each internal node).
`class`	`UnconstrainedTree`	provides parameter interface to an unconstrained tree (parameters are all available branch lengths)

Constructors in pal.tree with parameters of type ParameterizedTree.ParameterizedTreeBase
Constructor	Description
`ParameterizedTreeBase(ParameterizedTree.ParameterizedTreeBase toCopy)`	Cloning constructor