ParameterizedTree

All Superinterfaces:

IdGroup, Parameterized, java.io.Serializable, Tree, Units, UnitsProvider

All Known Implementing Classes:

ClockTree, DemographicClockTree, LogParameterizedTree, MutationRateModelTree, UnconstrainedTree
```
public interface ParameterizedTree
extends Parameterized, Tree
```
abstract base class for a tree with an Parameterized interface

Version:

$Id: ParameterizedTree.java,v 1.21 2003/06/04 03:17:52 matt Exp $

Author:

Alexei Drummond, Korbinian Strimmer, Matthew Goode

Nested Class Summary

Nested Classes
Modifier and Type	Interface	Description
`static interface`	`ParameterizedTree.Factory`	Factory interface
`static class`	`ParameterizedTree.ParameterizedTreeBase`	For parameterisations that work by adjusting a base tree (that is, they aren't really tree's themselves...)

Nested classes/interfaces inherited from interface pal.misc.IdGroup
IdGroup.Utils

Nested classes/interfaces inherited from interface pal.misc.Parameterized
Parameterized.Null, Parameterized.ParameterizedBase, Parameterized.ParameterizedUser, Parameterized.Utils

Nested classes/interfaces inherited from interface pal.tree.Tree
Tree.TreeBase

Field Summary
- Fields inherited from interface pal.misc.Units
  DAYS, EXPECTED_SUBSTITUTIONS, GENERATIONS, MONTHS, SAMPLE, SHORT_UNIT_NAMES, UNIT_NAMES, UNKNOWN, YEARS

Method Summary

All Methods Instance Methods Abstract Methods
Modifier and Type Method Description

OrthogonalHints getOrthogonalHints()

java.lang.String getParameterizationInfo()
- Methods inherited from interface pal.misc.IdGroup
  getIdCount, getIdentifier, setIdentifier, whichIdNumber
- Methods inherited from interface pal.misc.Parameterized
  getDefaultValue, getLowerLimit, getNumParameters, getParameter, getUpperLimit, setParameter, setParameterSE
- Methods inherited from interface pal.tree.Tree
  createNodeList, getAttribute, getCopy, getExternalNode, getExternalNodeCount, getInternalNode, getInternalNodeCount, getRoot, getUnits, setAttribute, setRoot

Method Detail

getOrthogonalHints
```
OrthogonalHints getOrthogonalHints()
```

getParameterizationInfo

java.lang.String getParameterizationInfo()