Uses of Interface
pal.substmodel.SingleSplitDistribution
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Packages that use SingleSplitDistribution Package Description pal.eval Classes for evaluating evolutionary hypothesis (chi-square and likelihood criteria) and estimating model parameters.pal.substmodel Classes describing substitution models, i.e. -
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Uses of SingleSplitDistribution in pal.eval
Methods in pal.eval with parameters of type SingleSplitDistribution Modifier and Type Method Description static MolecularClockLikelihoodModel.InstanceSingleSplitMolecularClockLikelihoodModel. createInstance(RateMatrixGroup beforeSplitMatrices, RateMatrixGroup afterSplitMatrics, NeoParameterized acrossSplitParameters, SingleSplitDistribution probabilityModel, double splitTime)static MolecularClockLikelihoodModel.InstanceSingleSplitMolecularClockLikelihoodModel. createInstance(RateMatrixGroup beforeSplitMatrices, RateMatrixGroup afterSplitMatrics, NeoParameterized acrossSplitParameters, SingleSplitDistribution probabilityModel, LHCalculator.Factory baseFactory, double splitTime) -
Uses of SingleSplitDistribution in pal.substmodel
Classes in pal.substmodel that implement SingleSplitDistribution Modifier and Type Class Description classConstantIndependentSingleSplitDistributionTitle: ConstantIndependentSingleSplitDistributionclassSaturatedSingleSplitDistributionTitle: SaturatedSingleSplitDistributionclassVariableIndependentSingleSplitDistributionTitle: VariableIndependentSingleSplitDistribution
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