Uses of Class pal.substmodel.AminoAcidModel

Packages that use AminoAcidModel
Package Description

pal.substmodel
Classes describing substitution models, i.e.

Uses of AminoAcidModel in pal.substmodel

Subclasses of AminoAcidModel in pal.substmodel
Modifier and Type	Class	Description
`class`	`BLOSUM62`	BLOSUM62 model of amino acid evolution
`class`	`CPREV`	CPREV model of amino acid evolution (J.Adachi et al.
`class`	`Dayhoff`	Dayhoff model for amino acid evolution Dayhoff, M.O., Schwartz, R.M., Orcutt, B.C.
`class`	`JTT`	JTT model of amino acid evolution Jones, D.
`class`	`MTREV24`	MTREV24 model of amino acid evolution
`class`	`VT`	VT (variable time matrix) model of amino acid evolution Modeling Amino Acid Replacement Mueller, T.
`class`	`WAG`	WAG model of amino acid evolution (S.

Methods in pal.substmodel that return AminoAcidModel
Modifier and Type	Method	Description
`static AminoAcidModel`	AminoAcidModel.`getInstance(int modelID, double[] freq)`	Create amino acid model according to model type