Uses of Interface
pal.misc.Summarizable
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Packages that use Summarizable Package Description pal.coalescent Classes to model population genetic processes using the coalescent.pal.mep Classes for the analysis of "measurably evolving populations" (mep).pal.misc Classes that don't fit elsewhere ;^) -
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Uses of Summarizable in pal.coalescent
Classes in pal.coalescent that implement Summarizable Modifier and Type Class Description classConstantPopulationThis class models coalescent intervals for a constant population (parameter: N0=present-day population size).classConstExpConstThis class models a population that grows exponentially from an initial population size alpha N0 at time y to a size N0 at time x until the present-day.classConstExpGrowthThis class models a population that grows exponentially from an inital population size alpha N0 to a present-day size N0.classDemographicModelThis abstract class contains methods that are of general use for modelling coalescent intervals given a demographic model.classExpandingPopulationThis class models a population that grows exponentially from an inital population size alpha N0 to a present-day size N0.classExponentialGrowthThis class models an exponentially growing (or shrinking) population (Parameters: N0=present-day population size; r=growth rate). -
Uses of Summarizable in pal.mep
Classes in pal.mep that implement Summarizable Modifier and Type Class Description classConstantMutationRateThis class models a constant mutation rate (parameter: mu = mutation rate).classMutationRateModelThis abstract class contains methods that are of general use for modelling mutation rate changes over time.classSteppedMutationRateThis class models a step-wise mutation rate.classWindowedMutationRateThis class models a windowed mutation rate (parameter: mu = mutation rate). -
Uses of Summarizable in pal.misc
Classes in pal.misc that implement Summarizable Modifier and Type Class Description classSimpleSummarizableConstructors in pal.misc with parameters of type Summarizable Constructor Description SimpleSummarizable(Summarizable toImitate)The Imitation constructor - for immitating another Summarizable object with minimum memory requirements
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