Uses of Interface
pal.misc.SampleInformation
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Packages that use SampleInformation Package Description pal.mep Classes for the analysis of "measurably evolving populations" (mep).pal.misc Classes that don't fit elsewhere ;^)pal.treesearch -
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Uses of SampleInformation in pal.mep
Methods in pal.mep with parameters of type SampleInformation Modifier and Type Method Description ConstraintModelDeltaModel. buildConstraintModel(SampleInformation si, MolecularClockLikelihoodModel.Instance likelihoodModel)ConstraintModelMutationRateModel.Factory. buildConstraintModel(SampleInformation si, MolecularClockLikelihoodModel.Instance likelihoodModel) -
Uses of SampleInformation in pal.misc
Classes in pal.misc that implement SampleInformation Modifier and Type Class Description classTOCDSampleInformationTitle: TOCDSampleInformationMethods in pal.misc that return SampleInformation Modifier and Type Method Description SampleInformationSampleInformation.Factory. createSampleInformation(java.lang.String[] allLeafIDs) -
Uses of SampleInformation in pal.treesearch
Constructors in pal.treesearch with parameters of type SampleInformation Constructor Description FixedBSRDTGlobalClockModel(SampleInformation sampleInformation, MolecularClockLikelihoodModel.Instance likelihoodModel, double rate)FixedSRDTGlobalClockModel(SampleInformation sampleInformation, MolecularClockLikelihoodModel.Instance likelihoodModel, double rate)MRDTGlobalClockModel(SampleInformation sampleInformation, MolecularClockLikelihoodModel.Instance likelihoodModel)MRDTGlobalClockModel(SampleInformation sampleInformation, MolecularClockLikelihoodModel.Instance likelihoodModel, double[] rateChangeTimes)SRDTGlobalClockModel(SampleInformation sampleInformation, MolecularClockLikelihoodModel.Instance likelihoodModel)SRDTGlobalClockModel(SampleInformation sampleInformation, MolecularClockLikelihoodModel.Instance likelihoodModel, boolean allowMetaRate)
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