IdGroup

All Superinterfaces:

java.io.Serializable

All Known Subinterfaces:

Alignment, AnnotationAlignment, CharacterAlignment, ParameterizedTree, Tree

All Known Implementing Classes:

AbstractAlignment, AlignmentDistanceMatrix, AlignmentReaders.PhylipClustalAlignment, AlignmentReaders.UnalignedAlignment, BootstrappedAlignment, ClockTree, ClusterTree, ConcatenatedAlignment, ConcatenatedAnnotatedAlignment, DemographicClockTree, DistanceMatrix, GapBalancedAlignment, IndelAlignment, IndelAnnotatedAlignment, JukesCantorDistanceMatrix, JumbledAlignment, LogParameterizedTree, MultiLocusAnnotatedAlignment, MutationRateModelTree, NeighborJoiningTree, ParameterizedTree.ParameterizedTreeBase, ReadAlignment, ReadAlignmentOld, ReadDistanceMatrix, ReadTree, SimpleAlignment, SimpleAnnotatedAlignment, SimpleCharacterAlignment, SimpleIdGroup, SimpleTree, SimulatedAlignment, SitePattern, StrippedAlignment, StrippedAnnotatedAlignment, SUPGMADistanceMatrix, SUPGMATree, TimeOrderCharacterData, Tree.TreeBase, TreeDistanceMatrix, UnconstrainedTree, UPGMATree
```
public interface IdGroup
extends java.io.Serializable
```
An indexed group of identifiers. For example of group of taxa related by a phylogenetic tree.
NOTE: Was called Taxa but not general enough.

Version:

$Id: IdGroup.java,v 1.10 2002/10/27 05:46:28 matt Exp $

Author:

Alexei Drummond

Nested Class Summary

Nested Classes
Modifier and Type Interface Description

static class IdGroup.Utils

Method Summary

All Methods Instance Methods Abstract Methods
Modifier and Type	Method	Description
`int`	`getIdCount()`	Returns the number of identifiers in this group
`Identifier`	`getIdentifier(int i)`	Returns the ith identifier.
`void`	`setIdentifier(int i, Identifier id)`	Sets the ith identifier.
`int`	`whichIdNumber(java.lang.String name)`	returns the index of the identifier with the given name.

- Method Detail
  - getIdCount
```
int getIdCount()
```
    Returns the number of identifiers in this group
  - getIdentifier
```
Identifier getIdentifier(int i)
```
    Returns the ith identifier.
  - setIdentifier
```
void setIdentifier(int i,
                   Identifier id)
```
    Sets the ith identifier.
  - whichIdNumber
```
int whichIdNumber(java.lang.String name)
```
    returns the index of the identifier with the given name.