Uses of Interface
pal.eval.UnconstrainedLikelihoodModel.Leaf
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Packages that use UnconstrainedLikelihoodModel.Leaf Package Description pal.eval Classes for evaluating evolutionary hypothesis (chi-square and likelihood criteria) and estimating model parameters.pal.treesearch -
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Uses of UnconstrainedLikelihoodModel.Leaf in pal.eval
Classes in pal.eval that implement UnconstrainedLikelihoodModel.Leaf Modifier and Type Class Description static classSimpleUnconstrainedLikelihoodModel.LeafImplMethods in pal.eval that return UnconstrainedLikelihoodModel.Leaf Modifier and Type Method Description UnconstrainedLikelihoodModel.LeafUnconstrainedLikelihoodModel.Instance. createNewLeaf(int[] patternStateMatchup, int numberOfPatterns)Create anew leaf calculatorUnconstrainedLikelihoodModel.LeafSimpleUnconstrainedLikelihoodModel.LeafImpl. getCopy()UnconstrainedLikelihoodModel.LeafUnconstrainedLikelihoodModel.Leaf. getCopy()Create a new Leaf calculator that has exactly the same properties as this one (but is different such that it may be used independently) -
Uses of UnconstrainedLikelihoodModel.Leaf in pal.treesearch
Methods in pal.treesearch that return UnconstrainedLikelihoodModel.Leaf Modifier and Type Method Description UnconstrainedLikelihoodModel.LeafConstraintModel. createNewFreeLeaf(int[] patternStateMatchup, int numberOfPatterns)UnconstrainedLikelihoodModel.LeafFixedBSRDTGlobalClockModel. createNewFreeLeaf(int[] patternStateMatchup, int numberOfPatterns)UnconstrainedLikelihoodModel.LeafFixedSRDTGlobalClockModel. createNewFreeLeaf(int[] patternStateMatchup, int numberOfPatterns)UnconstrainedLikelihoodModel.LeafGlobalClockModel. createNewFreeLeaf(int[] patternStateMatchup, int numberOfPatterns)UnconstrainedLikelihoodModel.LeafMRDTGlobalClockModel. createNewFreeLeaf(int[] patternStateMatchup, int numberOfPatterns)UnconstrainedLikelihoodModel.LeafSRDTGlobalClockModel. createNewFreeLeaf(int[] patternStateMatchup, int numberOfPatterns)UnconstrainedLikelihoodModel.LeafUnconstrainedModel. createNewFreeLeaf(int[] patternStateMatchup, int numberOfPatterns)protected UnconstrainedLikelihoodModel.LeafAbstractLeafNode. createNewFreeLeafCalculator(GeneralConstructionTool tool)UnconstrainedLikelihoodModel.LeafGeneralConstructionTool. createNewFreeLeafCalculator(int[] patternStateMatchup, int numberOfPatterns)
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