java.lang.Object
- pal.eval.SingleSplitMolecularClockLikelihoodModel

All Implemented Interfaces:: MolecularClockLikelihoodModel

public class SingleSplitMolecularClockLikelihoodModel
extends java.lang.Object
implements MolecularClockLikelihoodModel

Nested Class Summary
- Nested classes/interfaces inherited from interface pal.eval.MolecularClockLikelihoodModel
  MolecularClockLikelihoodModel.External, MolecularClockLikelihoodModel.HeightConverter, MolecularClockLikelihoodModel.Instance, MolecularClockLikelihoodModel.Internal, MolecularClockLikelihoodModel.Leaf, MolecularClockLikelihoodModel.Simulator

Constructor Summary

Constructors
Constructor Description

SingleSplitMolecularClockLikelihoodModel()

Method Summary

All Methods Static Methods Concrete Methods
Modifier and Type	Method	Description
`static MolecularClockLikelihoodModel.Instance`	`createInstance(RateMatrixGroup beforeSplitMatrices, RateMatrixGroup afterSplitMatrics, NeoParameterized acrossSplitParameters, double splitTime)`
`static MolecularClockLikelihoodModel.Instance`	`createInstance(RateMatrixGroup beforeSplitMatrices, RateMatrixGroup afterSplitMatrics, NeoParameterized acrossSplitParameters, double[] classProbabilities, double splitTime)`
`static MolecularClockLikelihoodModel.Instance`	`createInstance(RateMatrixGroup beforeSplitMatrices, RateMatrixGroup afterSplitMatrics, NeoParameterized acrossSplitParameters, SingleSplitDistribution probabilityModel, double splitTime)`
`static MolecularClockLikelihoodModel.Instance`	`createInstance(RateMatrixGroup beforeSplitMatrices, RateMatrixGroup afterSplitMatrics, NeoParameterized acrossSplitParameters, SingleSplitDistribution probabilityModel, LHCalculator.Factory baseFactory, double splitTime)`
`static void`	`main(java.lang.String[] args)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail
- SingleSplitMolecularClockLikelihoodModel
```
public SingleSplitMolecularClockLikelihoodModel()
```

Method Detail

createInstance

public static final MolecularClockLikelihoodModel.Instance createInstance(RateMatrixGroup beforeSplitMatrices,
                                                                          RateMatrixGroup afterSplitMatrics,
                                                                          NeoParameterized acrossSplitParameters,
                                                                          SingleSplitDistribution probabilityModel,
                                                                          LHCalculator.Factory baseFactory,
                                                                          double splitTime)

createInstance

public static final MolecularClockLikelihoodModel.Instance createInstance(RateMatrixGroup beforeSplitMatrices,
                                                                          RateMatrixGroup afterSplitMatrics,
                                                                          NeoParameterized acrossSplitParameters,
                                                                          SingleSplitDistribution probabilityModel,
                                                                          double splitTime)

createInstance

public static final MolecularClockLikelihoodModel.Instance createInstance(RateMatrixGroup beforeSplitMatrices,
                                                                          RateMatrixGroup afterSplitMatrics,
                                                                          NeoParameterized acrossSplitParameters,
                                                                          double splitTime)

createInstance

public static final MolecularClockLikelihoodModel.Instance createInstance(RateMatrixGroup beforeSplitMatrices,
                                                                          RateMatrixGroup afterSplitMatrics,
                                                                          NeoParameterized acrossSplitParameters,
                                                                          double[] classProbabilities,
                                                                          double splitTime)

main

public static final void main(java.lang.String[] args)

Class SingleSplitMolecularClockLikelihoodModel

Nested Class Summary

Nested classes/interfaces inherited from interface pal.eval.MolecularClockLikelihoodModel

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Detail

SingleSplitMolecularClockLikelihoodModel

Method Detail

createInstance

createInstance

createInstance

createInstance

main