Constructor Detail

• PatternInfo

  public PatternInfo​(int numberOfSites,
                     boolean binaryPattern)

• PatternInfo

  public PatternInfo​(int[] sitePatternMatchup,
                     int[] patternWeights,
                     int[] patternLookup,
                     int initialNumberOfPatterns)

• PatternInfo

  public PatternInfo​(int[] sitePatternMatchup,
                     int initialNumberOfPatterns)

• PatternInfo

  public PatternInfo​(int[] sitePatternMatchup,
                     int[] patternWeights,
                     int initialNumberOfPatterns)

Method Detail

• getCopy

  public PatternInfo getCopy()

  Obtain an exact copy of this pattern info

  Returns:

  the required copy

• toString

  public java.lang.String toString()

  Overrides:

  toString in class java.lang.Object

• sitePatternMatchupToString

  public java.lang.String sitePatternMatchupToString()

• getPatternLookup

  public final int[] getPatternLookup()

• getPatternWeights

  public int[] getPatternWeights()

• getNumberOfSites

  public final int getNumberOfSites()

• getSitePatternMatchup

  public final int[] getSitePatternMatchup()

• getNumberOfPatterns

  public final int getNumberOfPatterns()

• setNumberOfPatterns

  public void setNumberOfPatterns​(int n)

• build

  public int build​(PatternInfo leftPattern,
                   PatternInfo rightPattern,
                   int numberOfSites)