Package pal.eval
Interface MolecularClockLikelihoodModel.Instance
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- All Superinterfaces:
java.io.Serializable
- Enclosing interface:
- MolecularClockLikelihoodModel
public static interface MolecularClockLikelihoodModel.Instance extends java.io.Serializable
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Method Summary
All Methods Instance Methods Abstract Methods Modifier and Type Method Description ConditionalProbabilityStorecreateAppropriateConditionalProbabilityStore(boolean isForLeaf)MolecularClockLikelihoodModel.ExternalcreateNewExternal(MolecularClockLikelihoodModel.HeightConverter converter)MolecularClockLikelihoodModel.InternalcreateNewInternal(MolecularClockLikelihoodModel.HeightConverter converter)MolecularClockLikelihoodModel.LeafcreateNewLeaf(MolecularClockLikelihoodModel.HeightConverter converter, PatternInfo pattern, int[] patternStateMatchup)NeoParameterizedgetParameterAccess()java.lang.StringgetSubstitutionModelSummary()
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Method Detail
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getSubstitutionModelSummary
java.lang.String getSubstitutionModelSummary()
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createNewLeaf
MolecularClockLikelihoodModel.Leaf createNewLeaf(MolecularClockLikelihoodModel.HeightConverter converter, PatternInfo pattern, int[] patternStateMatchup)
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createNewExternal
MolecularClockLikelihoodModel.External createNewExternal(MolecularClockLikelihoodModel.HeightConverter converter)
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createNewInternal
MolecularClockLikelihoodModel.Internal createNewInternal(MolecularClockLikelihoodModel.HeightConverter converter)
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createAppropriateConditionalProbabilityStore
ConditionalProbabilityStore createAppropriateConditionalProbabilityStore(boolean isForLeaf)
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getParameterAccess
NeoParameterized getParameterAccess()
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