Uses of Class
pal.alignment.AlignmentParseException
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Packages that use AlignmentParseException Package Description pal.alignment Classes dealing with sequence alignments, including methods for reading and printing in several possible formats, as well as rearranging and concatenating. -
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Uses of AlignmentParseException in pal.alignment
Methods in pal.alignment that throw AlignmentParseException Modifier and Type Method Description static Alignment[]AlignmentReaders. readAllPhylipClustalAlignments(java.io.Reader r, DataType dt)Read an alignment in phylip/clustal/simple format.static AlignmentAlignmentReaders. readPhylipClustalAlignment(java.io.Reader r, DataType dt)Read an alignment in phylip/clustal/simple format.static voidAlignmentReaders. readPhylipClustalAlignment(java.io.Reader r, DataType dt, AlignmentReceiver receiver)Read an alignment in phylip/clustal/simple format.Constructors in pal.alignment that throw AlignmentParseException Constructor Description ReadAlignment(java.io.PushbackReader input)read from streamReadAlignment(java.lang.String file)read from fileReadAlignmentOld(java.io.PushbackReader input)read from streamReadAlignmentOld(java.lang.String file)read from file
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