Uses of Class
org.biojava.nbio.structure.io.FileParsingParameters
Packages that use FileParsingParameters
Package
Description
Input and Output of Structures
Input and Output of mmcif files.
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Uses of FileParsingParameters in org.biojava.nbio.structure.align.util
Fields in org.biojava.nbio.structure.align.util declared as FileParsingParametersMethods in org.biojava.nbio.structure.align.util that return FileParsingParametersMethods in org.biojava.nbio.structure.align.util with parameters of type FileParsingParametersModifier and TypeMethodDescriptionvoidAtomCache.setFileParsingParams(FileParsingParameters params) -
Uses of FileParsingParameters in org.biojava.nbio.structure.io
Methods in org.biojava.nbio.structure.io that return FileParsingParametersModifier and TypeMethodDescriptionLocalPDBDirectory.getFileParsingParameters()PDBFileParser.getFileParsingParameters()SandboxStyleStructureProvider.getFileParsingParameters()StructureProvider.getFileParsingParameters()Get the parameters that should be used for file parsingMethods in org.biojava.nbio.structure.io with parameters of type FileParsingParametersModifier and TypeMethodDescriptionvoidLocalPDBDirectory.setFileParsingParameters(FileParsingParameters params) voidPDBFileParser.setFileParsingParameters(FileParsingParameters params) voidSandboxStyleStructureProvider.setFileParsingParameters(FileParsingParameters params) voidStructureProvider.setFileParsingParameters(FileParsingParameters params) Set the parameters that should be used for file parsingConstructors in org.biojava.nbio.structure.io with parameters of type FileParsingParameters -
Uses of FileParsingParameters in org.biojava.nbio.structure.io.cif
Methods in org.biojava.nbio.structure.io.cif with parameters of type FileParsingParametersModifier and TypeMethodDescriptionstatic StructureCifFileConverter.fromCifFile(org.rcsb.cif.model.CifFile cifFile, FileParsingParameters parameters) Convert CifFile to Structure.static StructureCifFileConverter.fromInputStream(InputStream inputStream, FileParsingParameters parameters) Convert InputStream to Structure.static StructureCifFileConverter.fromPath(Path path, FileParsingParameters parameters) Read data from a file and convert to Structure. -
Uses of FileParsingParameters in org.biojava.nbio.structure.io.mmcif
Methods in org.biojava.nbio.structure.io.mmcif that return FileParsingParametersModifier and TypeMethodDescriptionChemCompConsumer.getFileParsingParameters()MetalBondConsumer.getFileParsingParameters()MMcifConsumer.getFileParsingParameters()SimpleMMcifConsumer.getFileParsingParameters()Methods in org.biojava.nbio.structure.io.mmcif with parameters of type FileParsingParametersModifier and TypeMethodDescriptionvoidChemCompConsumer.setFileParsingParameters(FileParsingParameters params) voidMetalBondConsumer.setFileParsingParameters(FileParsingParameters params) voidMMcifConsumer.setFileParsingParameters(FileParsingParameters params) voidSimpleMMcifConsumer.setFileParsingParameters(FileParsingParameters params)